Resources

CALMaR

• CALMaR repository
• Lesion interpretation pipeline
• Lesion segmentation benchmark
• CALMaR quality-control rubric
• CALMaR knowledge base

Neurodesk and learning

• NeurodeskEDU provides static tutorials and executable examples.
• NeurodeskEDU source shows how examples are structured, tested, and published.
• Neurodesk documentation covers supported environments and reproducible containers.
• Renton et al. describe Neurodesk's portable and reproducible environment in Nature Methods.

Standards and open data

• BIDS standardises neuroimaging data and metadata organisation.
• OpenNeuro hosts public BIDS datasets.
• The Aphasia Recovery Cohort is an open chronic-stroke resource used in CALMaR-related work.
• ATLAS provides curated stroke MRI and lesion masks.
• ISLES provides acute and subacute stroke lesion-segmentation benchmarks.

Lesion methods and interpretation

• MacIntosh and Graham review MRI contrasts used to visualise stroke and recovery: Frontiers in Neurology.
• Pustina et al. describe LINDA for chronic stroke lesion segmentation: Human Brain Mapping.
• Wilson and Hula review multivariate approaches to aphasia and neural substrates: Current Neurology and Neuroscience Reports.
• Salvalaggio et al. compare lesion and disconnection information for post-stroke deficit prediction: Brain.
• Boyd et al. distinguish developmental and trial-ready stroke recovery biomarkers: Neurorehabilitation and Neural Repair.
• Nichols et al. summarise MRI analysis and sharing practices: Nature Neuroscience.

Language systems

• Hickok and Poeppel describe a dorsal–ventral model of cortical speech processing: Nature Reviews Neuroscience.
• Fedorenko, Ivanova and Regev distinguish the core language-selective network from interacting perceptual, motor and broader cognitive systems: Nature Reviews Neuroscience.

Meta-analysis and decoding

• NiMARE documentation
• Salo et al. describe NiMARE in Aperture Neuro.